Bioconductor Volcano plot

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DiffBind volcano plot software error

5.1 years ago rbronste ▴ 60

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1.2k

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volcano plot rna seq

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.5k

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Volcano plot Parameters

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by Sanches • 0

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1.4k

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limma volcano plot

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by yul • 0

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volcano plot edgr

7.9 years ago elena.capel ▴ 10

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1.4k

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microarray limma volcano plot

updated 10.2 years ago by Gordon Smyth 52k • written 10.2 years ago by jyoti_cad • 0

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

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Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

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Popular Question to gingergeiger22 • 0